Journal Information
Journal ID (
pmc
):
Plos Comput Biol
ISSN:
1553734X
Publisher:
Plos
Article Information
© 2005 Quesneville et al.
Accepted
Day:
30
Month:
6
Year:
2005
Received
Day:
11
Month:
5
Year:
2005
pub
publication date:
Day:
29
Month:
7
Year:
2005
Volume:
1
ID:
1185648
PubMed Id:
16110336
Combined Evidence Annotation of Transposable Elements in Genome Sequences.
Hadi Quesneville , *a
Casey M. Bergman , b
Olivier Andrieu , a
Delphine Autard , a
Danielle Nouaud , a
Michael Ashburner , b
Dominique Anxolabehere . a
a Laboratoire Dynamique du Génome et Evolution, Institut Jacques Monod, Paris, France b Department of Genetics, University of Cambridge, Cambridge, United Kingdom
*
To whom correspondence should be addressed. Email: hq@ccr.jussieu.fr
Abstract
Transposable elements (TEs) are mobile,...in the genus Drosophila.
Introduction
Transposable elements (TEs) are mobile,...of TE biology.
One way ... gene models.
Results
Evaluation of Methods
The first step ...for TE detection.
Methods for the Annotation of Known TE Families
To allow direct ...MATCHER.
Footnotes
Competing interests. The authors have declared that no competing interests exist.
Author contributions. H. Quesneville, C. M. Bergman, M. Ashburner, and D. Anxolabehere conceived and designed the experiments. H. Quesneville, C. M. Bergman, and O. Andrieu performed the experiments. H. Quesneville, C. M. Bergman, O. Andrieu, D. Autard, and D. Nouaud analyzed the data. H. Quesneville, C. M. Bergman, O. Andrieu, D. Autard, and M. Ashburner contributed reagents/materials/analysis tools. H. Quesneville and C. M. Bergman wrote the paper.
Citation: Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, et al. (2005) Combined evidence annotation of transposable elements in genome sequences. PLoS Comp Biol 1(2): e22.
Acknowledgments
We thank ...S. Russell.
References
Abbreviations
BDGP
Bekerley Drosophila Project
Figures and Tables
[Figure ID:
]
Figure 1.
Schematic of Our TE Annotation Pipeline