1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36
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chrom position ref var normal_reads1 normal_reads2 normal_var_freq normal_gt tumor_reads1 tumor_reads2 tumor_var_freq tumor_gt somatic_status variant_p_value somatic_p_value tumor_reads1_plus tumor_reads1_minus tumor_reads2_plus tumor_reads2_minus
chr1 14464 A T 20 0 0% A 7 3 30% W Somatic 1.0 0.029556650246305542 0 7 1 2
chr1 14930 A G 1 48 97,96% G 146 54 27% A Unknown 1.0 1.843344701565351E-21 108 38 36 18
chr1 15820 G T 27 0 0% G 9 4 30,77% K Somatic 1.0 0.007823613086771071 1 8 3 1
chr1 129285 G A 0 9 100% A 53 14 20,9% G Unknown 1.0 5.736008051269414E-6 0 53 0 14
chr1 717474 C T 66 0 0% C 57 31 35,23% Y Somatic 1.0 1.7991929552865899E-9 1 56 1 30
chr1 741397 A G 14 0 0% A 7 5 41,67% R Somatic 1.0 0.012040133779264151 0 7 1 4
chr1 753269 C G 0 53 100% G 0 96 100% G Germline 4.252004377960163E-89 1.0 0 0 65 31
chr1 753405 C A 0 22 100% A 30 24 44,44% M Germline 1.0 1.0858172276183268E-6 1 29 1 23
chr1 753425 T C 0 11 100% C 26 9 25,71% T Unknown 1.0 1.2589965486461126E-5 0 26 0 9
chr1 808631 G A 0 16 100% A 11 9 45% R Germline 3.935963849997188E-11 2.7955812160483743E-4 10 1 8 1
chr1 808922 G A 0 72 100% A 0 69 100% A Germline 2.7108827088360404E-84 1.0 0 0 52 17
chr1 808928 C T 0 60 100% T 103 33 24,26% C Unknown 1.0 9.59523507266666E-27 77 26 27 6
chr1 881734 T C 62 0 0% T 36 32 47,06% Y Somatic 1.0 9.71847361183559E-12 26 10 20 12
chr1 887537 C T 31 0 0% C 12 9 42,86% Y Somatic 1.0 7.989235556303396E-5 3 9 2 7
chr1 887801 A G 0 6 100% G 0 11 100% G Germline 4.2852131239177147E-10 1.0 0 0 7 4
chr1 888639 T C 0 9 100% C 0 8 100% C Germline 4.2852131239177147E-10 1.0 0 0 0 8
chr1 888659 T C 0 17 100% C 0 18 100% C Germline 8.913746132430519E-21 1.0 0 0 2 16
chr1 896950 C A 56 0 0% C 25 30 54,55% M Somatic 1.0 2.6915791163877037E-12 8 17 11 19
chr1 897325 G C 0 30 100% C 53 12 18,46% G Unknown 1.0 2.3419201755927007E-15 22 31 4 8
chr1 909238 G C 0 8 100% C 0 5 100% C Germline 9.614829913658729E-8 1.0 0 0 5 0
chr1 909768 A G 0 14 100% G 0 10 100% G Germline 3.101005612159882E-14 1.0 0 0 2 8
chr1 948921 T C 0 31 100% C 46 11 19,3% T Unknown 1.0 7.690645926488384E-15 32 14 6 5
chr1 949654 A G 0 55 100% G 40 38 48,72% R Germline 1.0 1.6840233488752786E-12 19 21 16 22
chr1 949925 C T 0 9 100% T 2 6 75% T Germline 7.327714441899113E-8 0.2058823529411759 0 2 0 6
chr1 981087 A G 0 48 100% G 28 31 52,54% R Germline 1.0 1.2301692287976423E-9 22 6 24 7
chr1 982844 G C 0 9 100% C 68 0 0% G Unknown 1.0 6.198761061406022E-12 33 35 0 0
chr1 982941 T C 0 10 100% C 37 5 11,9% T Unknown 1.0 1.8982271823600982E-7 26 11 4 1
chr1 982994 T C 0 6 100% C 38 4 9,52% T Unknown 1.0 1.7112805659155856E-5 19 19 1 3
chr1 987200 C T 0 34 100% T 19 19 50% Y Germline 1.0 3.0016097649396463E-7 10 9 2 17
chr1 1158631 A G 0 53 100% G 26 18 40,91% R Germline 1.0 3.67095725066703E-12 20 6 16 2
chr1 1163804 C T 6 4 40% Y 8 9 52,94% Y Germline 1.8100282040500075E-5 0.40183066361555997 8 0 9 0
chr1 1163964 G A 58 45 43,69% R 121 0 0% G LOH 1.0 8.400827858047971E-19 88 33 0 0
chr1 1178245 C T 12 14 53,85% Y 8 9 52,94% Y Germline 2.0321587342187875E-9 0.6447996728408544 7 1 8 1
chr1 1222958 C T 23 33 58,93% Y 68 0 0% C LOH 1.0 2.468798513345102E-15 16 52 0 0 |
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